Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs75492419 chr4:1387763 C/T 0 116 41.77 39.75 4.13 KM Plot
THYM rs75528239 chr5:149862325 A/G 1.77E-8 117 41.77 35.13 12.63 KM Plot
THYM rs75566983 chr4:70256189 A/C 4.8E-13 119 41.22 42.3 6 KM Plot
THYM rs7556954 chr2:177454795 G/T 5.93E-6 117 41.77 50.1 25.83 KM Plot
THYM rs75621459 chr2:30781047 T/G 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs7562645 chr2:30766552 A/G 3.25E-7 119 38.33 46.6 13.23 KM Plot
THYM rs75655934 chr4:76386267 G/A 7.65E-6 116 38.83 39.28 60.13 KM Plot
THYM rs7565907 chr2:30846848 C/T 1.04E-5 116 22.3 50.47 33.92 KM Plot
THYM rs7570179 chr2:10953994 G/T 0.000205 118 42.33 38.58 62.72 KM Plot
THYM rs75709655 chr2:99665576 T/A 0 119 39.75 43.82 4.13 KM Plot
THYM rs75734548 chr2:10915958 A/C 0.00028 114 42.33 38.58 62.72 KM Plot
THYM rs75760064 chr4:70294027 C/A 6.15E-13 118 41.77 42.3 6 KM Plot
THYM rs75791714 chr4:70262412 G/T 4.8E-13 119 41.22 42.3 6 KM Plot
THYM rs7582742 chr2:241756477 C/T 5.93E-5 114 40.3 50.12 13.65 KM Plot
THYM rs75863846 chr15:42339660 C/T 0.000141 118 41.77 46.15 28.43 KM Plot